From e650930bc003ab729fbb370d23da5bf6c54bca31 Mon Sep 17 00:00:00 2001 From: Colas Geier Date: Wed, 28 Feb 2024 17:41:05 +0100 Subject: [PATCH] =?UTF-8?q?init=20export=20synth=C3=A8se=20par=20taxon?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- 5_GEONATURE/EXPORT/export_taxon_saisie.py | 149 ++++++++++++++++++++++ 1 file changed, 149 insertions(+) create mode 100644 5_GEONATURE/EXPORT/export_taxon_saisie.py diff --git a/5_GEONATURE/EXPORT/export_taxon_saisie.py b/5_GEONATURE/EXPORT/export_taxon_saisie.py new file mode 100644 index 0000000..cfc8745 --- /dev/null +++ b/5_GEONATURE/EXPORT/export_taxon_saisie.py @@ -0,0 +1,149 @@ +from pycen import con_gn + +sql = ''' +DROP VIEW IF EXISTS gn_exports.export_taxon_unique; + +CREATE VIEW gn_exports.export_taxon_unique AS +WITH af_actors AS ( + SELECT cafa.id_acquisition_framework, + json_build_object('type_role', + CASE + WHEN cafa.id_organism IS NOT NULL THEN 'organism'::TEXT + WHEN cafa.id_role IS NOT NULL THEN 'role'::TEXT + ELSE NULL::TEXT + END, + 'uuid_actor', coalesce(borg.uuid_organisme, tro.uuid_role), + 'cd_nomenclature_actor_role', tn.cd_nomenclature, 'identity', + CASE + WHEN cafa.id_organism IS NOT NULL + THEN json_build_object('organism_name', borg.nom_organisme) + WHEN cafa.id_role IS NOT NULL THEN json_build_object('first_name', + tro.nom_role, + 'last_name', + tro.prenom_role) END, + 'email', coalesce(borg.email_organisme, tro.email)) AS json_data + FROM gn_meta.cor_acquisition_framework_actor cafa + LEFT JOIN utilisateurs.bib_organismes borg ON cafa.id_organism = borg.id_organisme + LEFT JOIN utilisateurs.t_roles tro ON cafa.id_role = tro.id_role + JOIN ref_nomenclatures.t_nomenclatures tn + ON cafa.id_nomenclature_actor_role = tn.id_nomenclature), +af AS ( + SELECT taf.id_acquisition_framework, + jsonb_build_object('uuid', taf.unique_acquisition_framework_id, 'name', + taf.acquisition_framework_name, + 'desc', taf.acquisition_framework_desc, 'start_date', + taf.acquisition_framework_start_date, 'end_date', + taf.acquisition_framework_end_date, + 'initial_closing_date', taf.initial_closing_date, 'territorial_level', + ntl.cd_nomenclature, 'financing_type', nft.cd_nomenclature, 'target_description', + taf.target_description, 'ecologic_or_geologic_target', + taf.ecologic_or_geologic_target, 'actors', + json_agg(af_actors.json_data)) AS af_data + FROM gn_meta.t_acquisition_frameworks taf + JOIN af_actors ON af_actors.id_acquisition_framework = taf.id_acquisition_framework + LEFT JOIN ref_nomenclatures.t_nomenclatures ntl + ON taf.id_nomenclature_territorial_level = ntl.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures nft + ON taf.id_nomenclature_financing_type = nft.id_nomenclature + GROUP BY taf.id_acquisition_framework, taf.acquisition_framework_name, taf.acquisition_framework_desc, + taf.acquisition_framework_start_date, taf.acquisition_framework_end_date, taf.initial_closing_date, + ntl.cd_nomenclature, nft.cd_nomenclature), +ds_actors AS ( + SELECT cda.id_dataset, + json_build_object('type_role', + CASE + WHEN cda.id_organism IS NOT NULL THEN 'organism'::TEXT + WHEN cda.id_role IS NOT NULL THEN 'role'::TEXT + ELSE NULL::TEXT + END, 'uuid_actor', coalesce(borg.uuid_organisme, tro.uuid_role), + 'cd_nomenclature_actor_role', tn.cd_nomenclature, 'identity', + CASE + WHEN cda.id_organism IS NOT NULL + THEN json_build_object('organism_name', borg.nom_organisme) + WHEN cda.id_role IS NOT NULL THEN json_build_object('first_name', + tro.nom_role, + 'last_name', + tro.prenom_role) END, + 'email', coalesce(borg.email_organisme, tro.email)) AS json_data + FROM gn_meta.cor_dataset_actor cda + LEFT JOIN utilisateurs.bib_organismes borg ON cda.id_organism = borg.id_organisme + LEFT JOIN utilisateurs.t_roles tro ON cda.id_role = tro.id_role + JOIN ref_nomenclatures.t_nomenclatures tn + ON cda.id_nomenclature_actor_role = tn.id_nomenclature), + ds AS (SELECT tds.id_dataset, + tds.id_acquisition_framework, + -- tds.additional_data, + jsonb_build_object('uuid', tds.unique_dataset_id, 'name', tds.dataset_name, 'desc', tds.dataset_desc, + 'shortname', tds.dataset_shortname, 'data_type', ndt.cd_nomenclature, + 'collecting_method', ncm.cd_nomenclature, 'data_origin', ndo.cd_nomenclature, + 'dataset_objectif', ndso.cd_nomenclature, 'resource_type', nrt.cd_nomenclature, + 'source_status', nss.cd_nomenclature, 'territories', array_agg(DISTINCT + ref_nomenclatures.get_cd_nomenclature(cdt.id_nomenclature_territory)), + 'actors', json_agg(ds_actors.json_data)) AS dataset_data + FROM gn_meta.t_datasets tds + JOIN ds_actors ON ds_actors.id_dataset = tds.id_dataset + LEFT JOIN gn_meta.cor_dataset_territory cdt ON cdt.id_dataset = tds.id_dataset + LEFT JOIN ref_nomenclatures.t_nomenclatures ndt + ON tds.id_nomenclature_data_type = ndt.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures ncm + ON tds.id_nomenclature_collecting_method = ncm.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures ndo + ON tds.id_nomenclature_data_origin = ndo.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures ndso + ON tds.id_nomenclature_dataset_objectif = ndso.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures nrt + ON tds.id_nomenclature_resource_type = nrt.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures nss + ON tds.id_nomenclature_source_status = nss.id_nomenclature + GROUP BY tds.id_dataset, tds.id_acquisition_framework, tds.unique_dataset_id, tds.dataset_name, + tds.dataset_desc, tds.dataset_shortname, ndt.cd_nomenclature, ncm.cd_nomenclature, + ndo.cd_nomenclature, ndso.cd_nomenclature, nrt.cd_nomenclature, nss.cd_nomenclature) +SELECT DISTINCT ON (s.cd_nom) + s.cd_nom, + s.nom_cite, + t.regne, + t.classe, + t.ordre, + t.famille, + t.sous_famille, + t.cd_ref, + t.lb_nom, + t.nom_complet, + t.nom_vern, + t.group1_inpn, + t.group2_inpn, + t.group3_inpn, + count(s.cd_nom) occurence +FROM gn_synthese.synthese s + JOIN ds ON ds.id_dataset = s.id_dataset + JOIN af ON ds.id_acquisition_framework = af.id_acquisition_framework + LEFT JOIN ref_habitats.habref h ON h.cd_hab = s.cd_hab + LEFT JOIN ref_nomenclatures.t_nomenclatures n1 ON s.id_nomenclature_geo_object_nature = n1.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n2 ON s.id_nomenclature_grp_typ = n2.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n3 ON s.id_nomenclature_behaviour = n3.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n4 ON s.id_nomenclature_obs_technique = n4.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n5 ON s.id_nomenclature_bio_status = n5.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n6 ON s.id_nomenclature_bio_condition = n6.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n7 ON s.id_nomenclature_naturalness = n7.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n8 ON s.id_nomenclature_exist_proof = n8.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n9 ON s.id_nomenclature_diffusion_level = n9.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n10 ON s.id_nomenclature_life_stage = n10.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n11 ON s.id_nomenclature_sex = n11.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n12 ON s.id_nomenclature_obj_count = n12.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n13 ON s.id_nomenclature_type_count = n13.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n14 ON s.id_nomenclature_sensitivity = n14.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n15 ON s.id_nomenclature_observation_status = n15.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n16 ON s.id_nomenclature_blurring = n16.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n17 ON s.id_nomenclature_source_status = n17.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n18 ON s.id_nomenclature_info_geo_type = n18.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n19 ON s.id_nomenclature_determination_method = n19.id_nomenclature + LEFT JOIN ref_nomenclatures.t_nomenclatures n20 ON s.id_nomenclature_valid_status = n20.id_nomenclature + + JOIN taxonomie.taxref t ON t.cd_nom = s.cd_nom + JOIN gn_synthese.t_sources ts ON ts.id_source = s.id_source +Group by s.cd_nom, s.nom_cite, t.regne, t.classe, t.ordre, t.famille, t.sous_famille, t.cd_ref, t.lb_nom, t.nom_complet, t.nom_vern, t.group1_inpn, t.group2_inpn, t.group3_inpn +; +''' + +with con_gn.begin() as cnx: + cnx.execute(sql) \ No newline at end of file