import geopandas as gpd from uuid import uuid4 import json,urllib.request from numpy import ndarray dict_columns = { 'code_zh': 'code', 'nom_zh': 'main_name', 'date_visite':'create_date', } def get_nomenclature_id(con,cd,typ): """ Get the id_nomenclature for a given cd and typ. Parameters ---------- con : sqlalchemy.engine.Engine The database connection. cd : str The code of the nomenclature. typ : str The type of the nomenclature. Returns ------- int or None The id of the nomenclature or None if the nomenclature does not exist. """ sql = """ SELECT ref_nomenclatures.get_id_nomenclature('{typ}', '{cd}') """.format(cd=cd,typ=typ) with con.begin() as cnx: res = cnx.execute(sql) return res.one()[0] if res else None def to_tzh(df,con): tab = 't_zh' sch = 'pr_zh' lst_columns = [ x['name'] for x in con.dialect.get_columns(con,tab,sch) if x['name'] in df.columns ] to_ins = df[lst_columns].copy() try: to_ins.to_postgis( name=tab, con=con, schema=sch, index=False, if_exists='append', method='multi' ) except Exception as e: print(e) finally: print("INSERT data TO t_zh OK !") return gpd.pd.read_sql('SELECT id_zh,code FROM pr_zh.t_zh',con=con) # id_zh = df[['code','pk']].rename(columns={'pk':'id_zh'}) def to_cor_lim_list(cor_lim,con): """ Insert into cor_lim_list the list of delimitation for each zh area :param cor_lim: a dataframe with columns id_lim_list,cd_nomenclature_delimitation :param con: a sqlalchemy connection :return: None """ _cor_lim = (cor_lim .set_index('id_lim_list') .cd_nomenclature_delimitation.str.split(',',expand=True) .stack() .str.strip() .to_frame('cd_lim') .droplevel(-1) ) _cor_lim['id_lim'] = [get_nomenclature_id(con,x,'CRIT_DELIM') for x in _cor_lim.cd_lim] _cor_lim.drop('cd_lim',axis=1,inplace=True) try: _cor_lim.to_sql( name='cor_lim_list', con=con, schema='pr_zh', index=True, if_exists='append', method='multi' ) except Exception as e: print(e) finally: print("INSERT Délimitation TO cor_lim_list OK !") def to_cor_zh_cb(id_zh,df,con): """ Insert habitats to cor_zh_cb table. Parameters ---------- id_zh : pd.DataFrame DataFrame containing 'code' and 'id_zh' columns. df : pd.DataFrame DataFrame containing 'code' and 'habitat_corine_biotope' columns. con : sqlalchemy.engine.Engine Connection to the geonature database. Returns ------- None """ cor_zh_cb = (df .merge(id_zh,how='left',on='code') .set_index('id_zh') .habitat_corine_biotope.str.split(',') .explode() .str.strip() .to_frame('lb_code') .droplevel(-1) ) try: cor_zh_cb.to_sql( name='cor_zh_cb', con=con, schema='pr_zh', index=True, if_exists='append', method='multi' ) except Exception as e: print(e) finally: print("INSERT habitats to cor_zh_cb OK !") def check_cd_nomenclature_impact(cd): dizaine = range(0,100,10) _cd = [x+'.0' if float(x) not in dizaine and not x.endswith('.0') else x for x in cd] return _cd def to_t_activity(id_zh,actv,con): _activ = (actv .merge(id_zh,how='left',on='code') .drop('code',axis=1)) t_activ = gpd.pd.DataFrame() for i,x in _activ.iterrows(): res = gpd.pd.DataFrame(json.loads(x['acti_impact'])) res['id_zh'] = x['id_zh'] t_activ = gpd.pd.concat([t_activ,res]) t_activ.set_index('id_zh',inplace=True) t_activ.dropna(inplace=True,axis=1,how='all') t_activ.dropna(inplace=True,axis=0,how='all') t_activ['id_activity'] = [get_nomenclature_id(con,x,'ACTIV_HUM') for x in t_activ.cd_activite_humaine] t_activ['id_position'] = [get_nomenclature_id(con,x,'LOCALISATION') for x in t_activ.localisation] t_activ['id_impact_list'] = [uuid4() for _ in range(len(t_activ))] impact_list = (t_activ[['id_impact_list','impact']] .set_index('id_impact_list') .impact.explode() .to_frame('cd_impact') .reset_index() ) impact_list['_cd_impact'] = check_cd_nomenclature_impact(impact_list.cd_impact) impact_list['id_impact'] = [get_nomenclature_id(con,x,'IMPACTS') for x in impact_list._cd_impact] t_activ.drop(['cd_activite_humaine','localisation','impact'],axis=1,inplace=True) impact_list.drop(['cd_impact','_cd_impact'],axis=1,inplace=True) try: t_activ.to_sql( name='t_activity', con=con, schema='pr_zh', index=True, if_exists='append', method='multi' ) except Exception as e: print(e) finally: print("INSERT activity to t_activity OK !") try: impact_list.to_sql( name='cor_impact_list', con=con, schema='pr_zh', index=True, if_exists='append', method='multi' ) except Exception as e: print(e) finally: print("INSERT impact to cor_impact_list OK !") def check_habitat(habitat,con): sql = ''' SELECT lb_code FROM pr_zh.bib_cb WHERE lb_code {symbol} {code} '''.format( symbol='IN' if isinstance(habitat,(list,gpd.pd.Series,ndarray)) else '=', code=tuple(habitat) if isinstance(habitat,(list,gpd.pd.Series,ndarray)) else f"'{habitat}'" ) with con.begin() as cnx: res = cnx.execute(sql).all() return [x[0] for x in res if x] def filter_habitat(habitat,con): iscd_zh = check_habitat(habitat,con) _cd_zh = habitat[habitat.isin(iscd_zh)] _cd_notzh = habitat[~habitat.isin(iscd_zh)] cd_zh = _cd_zh.groupby(_cd_zh.index).aggregate(', '.join) cd_notzh = _cd_notzh.groupby(_cd_notzh.index).aggregate(', '.join) return cd_zh,cd_notzh def check_observ(obs,org,con): _obs = normalize_observers(obs) sql = ''' SELECT r.id_role AS ids_observers, CONCAT(r.nom_role, ' ', prenom_role) AS observers FROM utilisateurs.t_roles r JOIN utilisateurs.bib_organismes USING (id_organisme) WHERE CONCAT(UPPER(r.nom_role), ' ', INITCAP(prenom_role)) {symbol} {code} AND nom_organisme = '{org}' '''.format( symbol='IN' if isinstance(_obs,(list,gpd.pd.Series,ndarray)) else '=', code=tuple(_obs) if isinstance(_obs,(list,gpd.pd.Series,ndarray)) else f"'{_obs}'", org=org ) with con.begin() as cnx: res = cnx.execute(sql).all() return [x[0] for x in res if x] def insert_observ(obs,org,con): check_observ(obs,org,con) pass def normalize_observers(obs): _obs = obs.str.split(' ',expand=True) _obs[0] = _obs[0].str.upper() _obs[1] = _obs[1].str.title() _obs_stack = _obs.stack().droplevel(-1) return _obs_stack.groupby(_obs_stack.index).aggregate(' '.join) def insert_orga(org,con): pass def select_orga_user(org,con): sql =''' SELECT id_organisme FROM utilisateurs.bib_organismes WHERE nom_organisme = '{nom}' '''.format(nom=org[0]) with con.begin() as cnx: _res = cnx.execute(sql) res = _res.one_or_none() return res def insert_orga_user(org,con): res = select_orga_user(org,con) if not res : Q = input("Organisme `{}` non trouvé dans le schéma `utilisateurs`, voulez-vous l'ajouter ? (y/n) ".format(org[0])) if Q.lower() != 'y': return 'No' sql =''' INSERT INTO utilisateurs.bib_organismes (nom_organisme) VALUES ('{nom}') --ON CONFLICT (nom_organisme) DO NOTHING RETURNING id_organisme; '''.format(nom=org[0]) with con.begin() as cnx: _res = cnx.execute(sql) res = _res.one_or_none() else: print("Organisme `{}` existant dans le schéma `utilisateurs`".format(org[0])) return res[0] def select_orga_przh(org,con): sql =''' SELECT id_org FROM pr_zh.bib_organismes WHERE name = '{nom}' '''.format(nom=org[0]) with con.begin() as cnx: _res = cnx.execute(sql) res = _res.one_or_none() return res def insert_orga_przh(org,con): res = select_orga_przh(org,con) if not res : Q = input("Organisme `{}` non trouvé dans le schéma `pr_zh`, voulez-vous l'ajouter ? (y/n) ".format(org[0])) if Q.lower() != 'y': return 'No' sql =''' INSERT INTO pr_zh.bib_organismes (name,abbrevation,is_op_org) VALUES ('{nom}', {abbrev}, TRUE) --ON CONFLICT (name,abbrevation) DO NOTHING RETURNING id_org; '''.format(nom=org[0],abbrev=f"'{org[1]}'" if org[1] else 'NULL') with con.begin() as cnx: _res = cnx.execute(sql) res = _res.fetchall() else: print("Organisme `{}` existant dans le schéma `pr_zh`".format(org[0])) return res[0] def insert_users_missing(user,org,con): id_org = insert_orga_przh(org,con) id_user_orga = insert_orga_user(org,con) obsv_missing = insert_observ(user,id_user_orga,con) def insert_zh_fromapi(url,con,dep_filter,orga,prefix_hab_rq=''): """ Insert data from API into geonature database Parameters ---------- url : str url of the API con : sqlalchemy.engine.Engine connection to the geonature database dep_filter : str filter code_zh by this department code prefix_hab_rq : str prefix to add to remark_pres field for habitats not in geonature database Returns ------- None """ api = gpd.read_file(url) df = (api#[api.code_zh.str.startswith(dep_filter)] .rename(columns=dict_columns) .rename_geometry('geom') .merge(load_missing_propertie(url,'cd_nomenclature_delimitation',dep_filter),on='code') ) insert_users_missing(df.observers,orga,con) df['zh_uuid'] = [uuid4() for _ in range(len(df))] df['id_lim_list'] = [uuid4() for _ in range(len(df))] df['id_sdage'] = [get_nomenclature_id(con,x,'SDAGE') for x in df.cd_typo_sdage] cd_hab = (df .set_index('code') .habitat_corine_biotope .str.split(',').explode() .str.strip()) hab_zh,hab_notzh = filter_habitat(cd_hab,con) _df = (df .drop('habitat_corine_biotope',axis=1) .merge(hab_zh,how='left',right_index=True,left_on='code')) _df = _df.merge( prefix_hab_rq + hab_notzh.rename('remark_pres'), how='left',right_index=True,left_on='code' ) c = _df[_df.action=="Créer"].copy() u = _df[_df.action=="Modifier"].copy() if not c.empty: id_zh = to_tzh(c,con) to_cor_zh_cb(id_zh,c,con) to_cor_lim_list(c[['id_lim_list','cd_nomenclature_delimitation']],con) to_t_activity(id_zh,c[['code','acti_impact']],con) if not u.empty: raise('Script à coder !') def load_missing_propertie(url,propertie,dep_filter='38'): """ Load from api the missing properties for the given url, propertie and dep_filter. Parameters ---------- url : str url of the api propertie : str name of the propertie to retrieve dep_filter : str filter for the department, default is '38' Returns ------- pd.DataFrame DataFrame with columns 'code' and propertie """ data = urllib.request.urlopen(url).read() output = json.loads(data) features = output['items']['features'] res = { 'code':[x['properties']['code_zh'] for x in features if x['properties']['code_zh'].startswith(dep_filter)], propertie:[ ','.join(x['properties'][propertie]) for x in features if x['properties']['code_zh'].startswith(dep_filter)], } return gpd.pd.DataFrame(res) if __name__ == "__main__": from sqlalchemy import create_engine from sqlalchemy.engine import URL # Parametres bdd user = '' pwd = "" adr = '' base = '' url = URL.create("postgresql+psycopg2", username=user, password=pwd, host=adr, database=base) con_gn = create_engine(url) from pycen import con_gn # Numéro de département permettant d'identifier les zones humides concernées par le territoire # ['38', '05'], default : 38 dep_filter = '38' # Préfixe ajouté dans le champs remark_pres lorsque des habitats décrits ne sont pas des habitats dit "humides" prefix_hab_rmk = 'Autre(s) habitat(s) décrit(s) :\n' # [Nom de l'organisme, Abbreviation] organisme = ['Parc national des Écrins','PNE'] api = 'https://geonature.ecrins-parcnational.fr/api/exports/api/21?departement=38' # insert_zh_fromapi(api,con_gn,dep_filter,organisme,prefix_hab_rq=prefix_hab_rmk)